Fig. 2

Average statistics for six newer motif finders (ChIPMunk, DMINDA, MEME v. 4.11.4, peak-motifs, STEME, XXmotif) and MOTIFSIM on seven additional sequence datasets. The first four statistics at the bottom of the figure are nucleotide level statistics. The next two are site level statistics. STEME shows lower performance than all other tools due to its nature design and implementation. MOTIFSIM has better performance than MEME and STEME and it is in an intermediate range comparing to other tools