Table 3 Display of features of current bioinformatics pipelines for metagenomic data analysis
From: Analysis and Interpretation of metagenomics data: an approach
Tasks/Pipeline | Quality control | Assembly | Gene detection | Functional annotation | Taxonomic analysis | Comparative analysis | Data management |
|---|---|---|---|---|---|---|---|
Clover metagenomics | No | No | Yes | Yes | Yes | Yes | Yes |
Galaxy platforma | Yes | No | No | No | Yes | Yes | No |
IMG/M | No | No | Yes | Yes | Yes | Yes | Yes |
MetAMOS | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
MG-RAST | No | No | Yes | Yes | Yes | Yes | Yes |
RAMMCAP | No | No | Yes | Yes | Yes | Yes | No |
Smash Community | Yes | Yes | Yes | Yes | Yes | Yes | No |