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Table 1 List of TDFs induced in cDNA-AFLP by KCl, NaCl and PEG treatments in roots of Aeluropus littoralis. TDFs were induced by 200 mM NaCl (N1), 400 mM NaCl (N2), 200 mM KCl (K1), 400 mM KCl (K2), − 0.9 MPa/280 gl-1 PEG (P1) and − 1.4 MPa/406 gl-1PEG (P2) in root. Sequences were compared to sequences in the GenBank database using the BLAST program. The E-value show the homology between the aligned sequences

From: Exploiting Differential Gene Expression to Discover Ionic and Osmotic-Associated Transcripts in the Halophyte Grass Aeluropus littoralis

TDF

Accession no.

Treatments

Length (bp)

Homology to gene

    

Name; accession number

E-value

1

JZ191042

P2

365

DUF21 domain-containing protein (Brachypodium distachyon); XM_003568464

9e-33

2

JZ191043

P2, P1, K2

350

Genomic DNA, chromosome 4, BAC clone: OSIGBa0158F13 (Oryza sativa); CR855151.1

4.0

3

JZ191047

N1, K1

312

Auxin response factor 3-like (Glycine max); XM_003529306.1

0.88

4

JZ191048

C, K2

284

Syntaxin 81 (Zea mays); EU963152

6e-46

5

JZ191088

P2, N1, K1

307

40S ribosomal protein S3 (Glycine max); XM_003548212

8e-55

6

JZ191049

P2

265

Aspartic proteinase (Oryza sativa); BAA02242.1

1.4

7

JZ191050

P1

261

Chloroplast envelope membrane protein (Staurastrum punctulatum); YP_636444

3.5

8

JZ191051

P1, C, N1

260

Voltage-dependent anion-selective channel protein 4 (Oryza sativa); Q0JJV1.3

3e-29

9

JZ191052

P2, K1

260

Myb-like DNA-binding domain (Zea mays); NM_001157897.1

0.59

10

JZ191054

P2, C

259

Myb-like DNA-binding domain (Zea mays); NM_001157897.1

2.8

11

JZ191055

P2, N1

247

G-box binding protein (Oryza sativa); EU847024.1

0.15

12

JZ191056

C, K2

259

40S ribosomal protein S12 (Zea mays); EU957837.1

2e-42

13

JZ191092

P2

260

Importin subunit beta-1-like (Oryza sativa); XP_015619891.1

8e-44

14

JZ191093

C

236

Nucleolin 2 (Zea mays); ONM05985.1

3e-08

15

JZ191094

P2

231

Putative glyoxalase I (Oryza sativa); BAD28547.1

0.008

16

JZ191096

C, N2

384

Serine/threonine-protein kinase SIS8 (Brachypodium distachyon); XM_010235744.3

4e-13

17

JZ191098

N2

212

Golgin candidate 4-like (Brachypodium distachyon); XM_003574367.1

4e-13

18

JZ191099

N2

207

Calcineurin B-like-interacting protein kinase (Hordeum brevisubulatum); JX679077.1

9e-17

19

JZ191100

P2, C, N2

237

Potassium transporter (HAK18) (Brachypodium distachyon); XM_010241173.1

7e-13

20

JZ191101

P1

180

Zinc finger CCCH domain-containing protein (Oryza sativa); XP_015632054.1

8e-20

21

JZ191102

P1

180

Zinc finger CCCH domain-containing protein 24 (Oryza sativa); Q10EL1.1

6e-19

22

JZ191103

P2, P1, N2, K2

170

Ubiquitin-related modifier (Zea mays); NM_001149704.1

3e-37

23

JZ191104

P2, N2, K1, K2

170

AP2/EREBP transcription factor ERF-1 (Gossypium hirsutum); AY779339.1

0.034

24

JZ191057

P1, C, N1, K1

159

Cullin-associated nedd8-dissociated protein1 (Oryza sativa); EF575856.1

9e-16

25

JZ191058

C, K1

136

S-adenosylmethionine decarboxylase (Oryza sativa); JN944362.1

5e-20

26

JZ191060

C

142

Metal-nicotianamine transporter (Glycine max); XM_003548246.1

2.6

27

JZ191061

P2

133

Zinc finger CCCH domain-containing protein (Oryza sativa); XM_003518517.1

6.7

28

JZ191062

C, N1, K1

126

Nucleotide binding site leucine-rich repeat (Pyrus sinkiangensis); ACJ05259

6.8

29

JZ191063

C, N1, K1

142

DNA glycosylase/lyase 701 (Oryza sativa); FJ536320

7.8

30

JZ191081

P1, C, N1,K1, K2

523

RNA binding protein (Oryza sativa); AAP85377.1

1e-37

32

JZ191070

P2, P1, C, N2, K2

391

60S ribosomal protein L38 (Zea mays); NP_001152328.1

1e-41

33

JZ191083

P1, K1

362

Cyclint 2-like protein (Oryza sativa); XP_015627068.1

2e-15

34

JZ191072

N1, K1, K2

361

Nucleosome assembly protein (Brachypodium distachyon); XP_003568000.1

0.44

35

JZ191073

C, N1, K1, K2

357

Beta-galactosidase (Bathycoccus prasinos); CCO19627.1

5e-05

36

JZ191075

P2, N1, K1, K2

329

Eukaryotic translation initiation factor p28 (Zea mays); NP_001104917.1

2e-65

37

JZ191064

C

566

Katanin p80 WD40 (Brachypodium distachyon); XP_003579480

1e-51

38

JZ191065

N1, K1

234

Dehydrin Xero 2-like (Brassica rapa); XM_013864438.2

7.9

39

JZ191066

K1

133

Glutamate decarboxylase-like (Vitis vinifera); XM_002263045.2

6.7

40

JZ191068

P2

403

ADP-glucose pyrophosphorylase (Zea mays); HM749416.1

0.005

41

JZ191107

C, N1

179

NADH dehydrogenase subunit J (Passiflora incarnate); KT721860.1

2.5

42

JZ191108

N2

152

Phytochrome C (Cenchrus americanus); JQ270557.1

0.027