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Table 6 Performance comparisons for USW, AKL, ALLR, PCC, CS, and MOTIFSIM for the selected motifs from TRANSFAC database in the collection. The number of motifs that were correctly identified by each method per species is listed. The percentage of motifs that were correctly identified by each method per species was also calculated

From: Performance evaluation for MOTIFSIM

 

Number of Motifs Correctly Identified

 

% of Motifs Correctly Identified

Species

USW

AKL

ALLR

PCC

CS

MOTIFSIM

Total # of Motifs by Species

USW

AKL

ALLR

PCC

CS

MOTIFSIM

Homo sapiens

11

19

19

19

17

19

19

58%

100%

100%

100%

89%

100%

Mus musculus

7

15

15

15

14

14

15

47%

100%

100%

100%

93%

93%

Saccharomyces cerevisiae

4

5

5

5

4

5

5

80%

100%

100%

100%

80%

100%

Drosophila melanogaster

6

7

7

7

4

7

7

86%

100%

100%

100%

57%

100%

Total

28

46

46

46

39

45

46

61%

100%

100%

100%

85%

98%