Table 2 Sixteen benchmark sequence datasets [29]. They are grouped by species. Each sequence dataset has an embedded transcription factor
Sequence Dataset | Dataset Type | Species | Transcription Factor | Number of Sequences | Sequence Length |
|---|---|---|---|---|---|
hm01g | Generic | Homo sapiens | AP-1 | 18 | 2000 |
hm04g | Generic | Homo sapiens | c-Jun | 13 | 2000 |
hm08m | Markov | Homo sapiens | CREB | 15 | 500 |
hm15g | Generic | Homo sapiens | NF-1 | 4 | 2000 |
hm17g | Generic | Homo sapiens | NF-kappaB | 11 | 500 |
hm19g | Generic | Homo sapiens | Sp1 | 5 | 500 |
hm22g | Generic | Homo sapiens | USF1 | 6 | 500 |
hm22m | Markov | Homo sapiens | USF1 | 6 | 500 |
mus04m | Markov | Mus musculus | C/Ebalpha | 7 | 1000 |
mus06g | Generic | Mus musculus | GATA-1 | 3 | 500 |
mus10g | Generic | Mus musculus | Sp1 | 13 | 1000 |
mus11m | Markov | Mus musculus | Sp1 | 12 | 500 |
yst02g | Generic | Saccharomyces cerevisiae | GAL04 | 4 | 500 |
yst03m | Markov | Saccharomyces cerevisiae | GCN4 | 8 | 500 |
yst06g | Generic | Saccharomyces cerevisiae | MCM1 | 7 | 500 |
yst09g | Generic | Saccharomyces cerevisiae | CAR1 | 16 | 1000 |