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Table 2 Morphometric measurements for which aberrant crypts were evaluated

From: A Method for Serial Tissue Processing and Parallel Analysis of Aberrant Crypt Morphology, Mucin Depletion, and Beta-Catenin Staining in an Experimental Model of Colon Carcinogenesis

Measurement type

Measurement name

Description with units

Average value(mean±SD)

Classification

CRYPTCOUNT

Total number of crypts per ACF

6.7 ± 5.4

Area

ACF_AREA

Area of each ACF in square microns (ÎĽm2 Ă— 104)

2.5 ± 1.5

 

ACF_EPIAREA

ACF epithelial area (μm2 × 104) (ACFAREA–CSUMAREA)

2.3 ± 1.3

 

C_SUMAREA

Sum of crypt area (ÎĽm2 Ă— 103)

2.2 ± 2.5

 

C_AVGAREA

Average crypt area in square microns (ÎĽm2 Ă— 102)

3.4 ± 1.7

Diameter

ACF_DIAAVG

ACF average diameter in microns (ÎĽm Ă— 102)

1.7 ± 0.5

 

C_AVGMAXDIA

Crypt maximum diameter in microns (ÎĽm Ă— 10)

3.0 ± 1.0

 

C_AVGSIZELEN

Crypt average size length in microns (ÎĽm Ă— 10)

2.9 ± 1.1

Perimeter

ACF_PERIM

ACF perimeter in microns (ÎĽm Ă— 102)

5.6 ± 1.6

 

C_AVGPERIM

Average crypt perimeter in microns (ÎĽm Ă— 10)

6.8 ± 2.7

Roundness

ACF_ROUND

ACF roundness (1 = round, higher numbers indicate polygonal shape)

1.1 ± 0.1

 

C_AVGROUND

Average crypt roundness (1 = round, high numbers indicate polygonal shape)

2.2 ± 0.6

 

C_ROUNDCAT

Crypt roundness category: 0–4

1.7 ± 0.7

Density

ACF_DEN

ACF density

0.5 ± 0.2

 

ACF_IOD

ACF integrated optical density (area Ă— density) (ÎĽm2 Ă— 104)

1.2 ± 0.9

HID-AB staining

P_SULFOAREA

Percent sulfomucin area (HID stain only) (%)

55 ± 32

 

P_SIALOAREA

Percent sialomucin area (AB stain only) (%)

16 ± 20

 

P_UAREA

Percent unstained area (lacks sulfo- and sialomucin HID-AB stain; high numbers, e.g., ≥85% probably indicate MDF) (%)

30 ± 26

 

MDF

Mucin-depleted foci (≥85% PUAREA)

–