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Table 1

From: A Method to Study the Epigenetic Chromatin States of Rare Hematopoietic Stem and Progenitor Cells; MiniChIP–Chip

ChIP assay buffers

 

1× RIPA Buffer (50 ml)

 

Final concentration:

Volume of stock buffers:

10 mM Tris–HCl, pH 7.5

500 μl of 1 M

1 mM EDTA

100 μl of 0.5 M

1% Triton X-100

5 ml of 10%

0.1% SDS

500 μl of 10%

0.1% Nadeoxycholate

500 μl of 10%

100 mM NaCl

1 ml of 5 M

Water

42.4 ml

2× RIPA Buffer (50 ml)

 

20 mM Tris–HCl, pH 7.5

1 ml of 1 M

2 mM EDTA

200 μl of 0.5 M

2% Triton X-100

10 ml of 10%

0.1% SDS

500 μl of 10%

0.2% Nadeoxycholate

1 ml of 10%

200 mM NaCl

2 ml of 5 M

Water

35.3 ml

Lysis Buffer (10 ml)

 

50 mM Tris–HCl, pH 8.0

500 μl of 1 M

10 mM EDTA

200 μl of 0.5 M

1% SDS

1 ml of 10%

Water

8.3 ml

TE Buffer (50 ml)

 

10 mM Tris–HCl, pH 8.0

500 μl of 1 M

10 mM EDTA

1 ml of 0.5 M

Water

48.5 ml

Elution Buffer (50 ml)

 

20 mM Tris–HCl, pH 7.5

1 ml of 1 M

5 mM EDTA

500 μl of 0.5 M

50 mM NaCl

500 μl of 5 M

Water

48 ml

  1. Containing 1% SDS and 50 μg/ml proteinase K prior to use
  2. All buffers must be 0.2 uM filtered sterilized, and are based on [41]