TY - JOUR AU - Clark, S. J. AU - Harrison, J. AU - Paul, C. L. AU - Frommer, M. PY - 1994 DA - 1994// TI - High sensitivity mapping of methylated cytosines JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.15.2990 DO - 10.1093/nar/22.15.2990 ID - Clark1994 ER - TY - JOUR AU - Frommer, M. AU - McDonald, L. E. AU - Millar, D. S. AU - Collis, C. M. AU - Watt, F. AU - Grigg, G. W. AU - Molloy, P. L. AU - Paul, C. L. PY - 1992 DA - 1992// TI - A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands JO - Proc Natl Acad Sci U S A VL - 89 UR - https://doi.org/10.1073/pnas.89.5.1827 DO - 10.1073/pnas.89.5.1827 ID - Frommer1992 ER - TY - JOUR AU - Herman, J. G. AU - Graff, J. R. AU - Myohanen, S. AU - Nelkin, B. D. AU - Baylin, S. B. PY - 1996 DA - 1996// TI - Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands JO - Proc Natl Acad Sci U S A VL - 93 UR - https://doi.org/10.1073/pnas.93.18.9821 DO - 10.1073/pnas.93.18.9821 ID - Herman1996 ER - TY - JOUR AU - Xiong, Z. AU - Laird, P. W. PY - 1997 DA - 1997// TI - COBRA: a sensitive and quantitative DNA methylation assay JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.12.2532 DO - 10.1093/nar/25.12.2532 ID - Xiong1997 ER - TY - JOUR AU - Gonzalgo, M. L. AU - Jones, P. A. PY - 1997 DA - 1997// TI - Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE) JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.12.2529 DO - 10.1093/nar/25.12.2529 ID - Gonzalgo1997 ER - TY - JOUR AU - Bianco, T. AU - Hussey, D. AU - Dobrovic, A. PY - 1999 DA - 1999// TI - Methylation-sensitive, single-strand conformation analysis (MS-SSCA): a rapid method to screen for and analyze methylation JO - Hum Mutat VL - 14 UR - https://doi.org/3.0.CO;2-A DO - 3.0.CO;2-A ID - Bianco1999 ER - TY - JOUR AU - Eads, C. A. AU - Danenberg, K. D. AU - Kawakami, K. AU - Saltz, L. B. AU - Blake, C. AU - Shibata, D. AU - Danenberg, P. V. AU - Laird, P. W. PY - 2000 DA - 2000// TI - MethyLight: a high-throughput assay to measure DNA methylation JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.8.e32 DO - 10.1093/nar/28.8.e32 ID - Eads2000 ER - TY - JOUR AU - Gitan, R. S. AU - Shi, H. AU - Chen, C. M. AU - Yan, P. S. AU - Huang, T. H. PY - 2002 DA - 2002// TI - Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.202801 DO - 10.1101/gr.202801 ID - Gitan2002 ER - TY - JOUR AU - Couvert, P. AU - Poirier, K. AU - Carrie, A. AU - Chalas, C. AU - Jouannet, P. AU - Beldjord, C. AU - Bienvenu, T. AU - Chelly, J. AU - Kerjean, A. PY - 2003 DA - 2003// TI - DHPLC-based method for DNA methylation analysis of differential methylated regions from imprinted genes JO - Biotechniques VL - 34 ID - Couvert2003 ER - TY - JOUR AU - Dupont, J. M. AU - Tost, J. AU - Jammes, H. AU - Gut, I. G. PY - 2004 DA - 2004// TI - De novo quantitative bisulfite sequencing using the pyrosequencing technology JO - Anal Biochem VL - 333 UR - https://doi.org/10.1016/j.ab.2004.05.007 DO - 10.1016/j.ab.2004.05.007 ID - Dupont2004 ER - TY - JOUR AU - Wojdacz, T. K. AU - Dobrovic, A. PY - 2007 DA - 2007// TI - Methylation-sensitive high resolution melting (MS-HRM): a new approach for sensitive and high-throughput assessment of methylation JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm013 DO - 10.1093/nar/gkm013 ID - Wojdacz2007 ER - TY - JOUR AU - Fraga, M. F. AU - Esteller, M. PY - 2002 DA - 2002// TI - DNA methylation: a profile of methods and applications JO - Biotechniques VL - 33 ID - Fraga2002 ER - TY - JOUR AU - Feil, R. AU - Charlton, J. AU - Bird, A. P. AU - Walter, J. AU - Reik, W. PY - 1994 DA - 1994// TI - Methylation analysis on individual chromosomes: improved protocol for bisulfite genomic sequencing JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.4.695 DO - 10.1093/nar/22.4.695 ID - Feil1994 ER - TY - JOUR AU - Tasheva, E. S. AU - Roufa, D. J. PY - 1994 DA - 1994// TI - Densely methylated DNA islands in mammalian chromosomal replication origins JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.9.5636 DO - 10.1128/MCB.14.9.5636 ID - Tasheva1994 ER - TY - JOUR AU - Raizis, A. M. AU - Schmitt, F. AU - Jost, J. P. PY - 1995 DA - 1995// TI - A bisulfite method of 5-methylcytosine mapping that minimizes template degradation JO - Anal Biochem VL - 226 UR - https://doi.org/10.1006/abio.1995.1204 DO - 10.1006/abio.1995.1204 ID - Raizis1995 ER - TY - JOUR AU - Olek, A. AU - Oswald, J. AU - Walter, J. PY - 1996 DA - 1996// TI - A modified and improved method for bisulfite based cytosine methylation analysis JO - Nucleic Acids Res VL - 24 UR - https://doi.org/10.1093/nar/24.24.5064 DO - 10.1093/nar/24.24.5064 ID - Olek1996 ER - TY - JOUR AU - Paulin, R. AU - Grigg, G. W. AU - Davey, M. W. AU - Piper, A. A. PY - 1998 DA - 1998// TI - Urea improves efficiency of bisulfite-mediated sequencing of 5'-methylcytosine in genomic DNA JO - Nucleic Acids Res VL - 26 UR - https://doi.org/10.1093/nar/26.21.5009 DO - 10.1093/nar/26.21.5009 ID - Paulin1998 ER - TY - JOUR AU - Grunau, C. AU - Clark, S. J. AU - Rosenthal, A. PY - 2001 DA - 2001// TI - Bisulfite genomic sequencing: systematic investigation of critical experimental parameters JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.13.e65 DO - 10.1093/nar/29.13.e65 ID - Grunau2001 ER - TY - JOUR AU - Shiraishi, M. AU - Hayatsu, H. PY - 2004 DA - 2004// TI - High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation JO - DNA Res VL - 11 UR - https://doi.org/10.1093/dnares/11.6.409 DO - 10.1093/dnares/11.6.409 ID - Shiraishi2004 ER - TY - JOUR AU - Shen, S. AU - Kruyt, F. A. AU - den Hertog, J. AU - van der Saag, P. T. AU - Kruijer, W. PY - 1991 DA - 1991// TI - Mouse and human retinoic acid receptor beta 2 promoters: sequence comparison and localization of retinoic acid responsiveness JO - DNA Seq VL - 2 ID - Shen1991 ER - TY - JOUR AU - Houle, B. AU - Rochette-Egly, C. AU - Bradley, W. E. PY - 1993 DA - 1993// TI - Tumor-suppressive effect of the retinoic acid receptor beta in human epidermoid lung cancer cells JO - Proc Natl Acad Sci U S A VL - 90 UR - https://doi.org/10.1073/pnas.90.3.985 DO - 10.1073/pnas.90.3.985 ID - Houle1993 ER - TY - JOUR AU - Viallet, J. AU - Liu, C. AU - Emond, J. AU - Tsao, M. S. PY - 1994 DA - 1994// TI - Characterization of human bronchial epithelial cells immortalized by the E6 and E7 genes of human papillomavirus type 16 JO - Exp Cell Res VL - 212 UR - https://doi.org/10.1006/excr.1994.1115 DO - 10.1006/excr.1994.1115 ID - Viallet1994 ER - TY - JOUR AU - Warnecke, P. M. AU - Stirzaker, C. AU - Song, J. AU - Grunau, C. AU - Melki, J. R. AU - Clark, S. J. PY - 2002 DA - 2002// TI - Identification and resolution of artifacts in bisulfite sequencing JO - Methods VL - 27 UR - https://doi.org/10.1016/S1046-2023(02)00060-9 DO - 10.1016/S1046-2023(02)00060-9 ID - Warnecke2002 ER - TY - JOUR AU - Rein, T. AU - Zorbas, H. AU - DePamphilis, M. L. PY - 1997 DA - 1997// TI - Active mammalian replication origins are associated with a high-density cluster of mCpG dinucleotides JO - Mol Cell Biol VL - 17 UR - https://doi.org/10.1128/MCB.17.1.416 DO - 10.1128/MCB.17.1.416 ID - Rein1997 ER - TY - JOUR AU - Lowe, T. AU - Sharefkin, J. AU - Yang, S. Q. AU - Dieffenbach, C. W. PY - 1990 DA - 1990// TI - A computer program for selection of oligonucleotide primers for polymerase chain reactions JO - Nucleic Acids Res VL - 18 UR - https://doi.org/10.1093/nar/18.7.1757 DO - 10.1093/nar/18.7.1757 ID - Lowe1990 ER - TY - JOUR AU - Warnecke, P. M. AU - Stirzaker, C. AU - Melki, J. R. AU - Millar, D. S. AU - Paul, C. L. AU - Clark, S. J. PY - 1997 DA - 1997// TI - Detection and measurement of PCR bias in quantitative methylation analysis of bisulfite-treated DNA JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.21.4422 DO - 10.1093/nar/25.21.4422 ID - Warnecke1997 ER - TY - JOUR AU - Bearzatto, A. AU - Szadkowski, M. AU - Macpherson, P. AU - Jiricny, J. AU - Karran, P. PY - 2000 DA - 2000// TI - Epigenetic regulation of the MGMT and hMSH6 DNA repair genes in cells resistant to methylating agents JO - Cancer Res VL - 60 ID - Bearzatto2000 ER - TY - JOUR AU - Boily, G. AU - Saikali, Z. AU - Sinnett, D. PY - 2004 DA - 2004// TI - Methylation analysis of the glypican 3 gene in embryonal tumours JO - Br J Cancer VL - 90 UR - https://doi.org/10.1038/sj.bjc.6601716 DO - 10.1038/sj.bjc.6601716 ID - Boily2004 ER - TY - JOUR AU - Yin, H. AU - Blanchard, K. L. PY - 2000 DA - 2000// TI - DNA methylation represses the expression of the human erythropoietin gene by two different mechanisms JO - Blood VL - 95 ID - Yin2000 ER - TY - JOUR AU - Shen, L. AU - Guo, Y. AU - Chen, X. AU - Ahmed, S. AU - Issa, J. P. PY - 2007 DA - 2007// TI - Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis JO - Biotechniques VL - 42 UR - https://doi.org/10.2144/000112312 DO - 10.2144/000112312 ID - Shen2007 ER - TY - JOUR AU - Gardiner-Garden, M. AU - Frommer, M. PY - 1987 DA - 1987// TI - CpG islands in vertebrate genomes JO - J Mol Biol VL - 196 UR - https://doi.org/10.1016/0022-2836(87)90689-9 DO - 10.1016/0022-2836(87)90689-9 ID - Gardiner-Garden1987 ER - TY - JOUR AU - Bovenzi, V. AU - Le, N. L. AU - Cote, S. AU - Sinnett, D. AU - Momparler, L. F. AU - Momparler, R. L. PY - 1999 DA - 1999// TI - DNA methylation of retinoic acid receptor beta in breast cancer and possible therapeutic role of 5-aza-2'-deoxycytidine JO - Anticancer Drugs VL - 10 UR - https://doi.org/10.1097/00001813-199906000-00007 DO - 10.1097/00001813-199906000-00007 ID - Bovenzi1999 ER - TY - JOUR AU - Bovenzi, V. AU - Momparler, R. L. PY - 2000 DA - 2000// TI - Quantitation of inhibition of DNA methylation of the retinoic acid receptor beta gene by 5-Aza-2'-deoxycytidine in tumor cells using a single-nucleotide primer extension assay JO - Anal Biochem VL - 281 UR - https://doi.org/10.1006/abio.2000.4562 DO - 10.1006/abio.2000.4562 ID - Bovenzi2000 ER - TY - JOUR AU - Sirchia, S. M. AU - Ferguson, A. T. AU - Sironi, E. AU - Subramanyan, S. AU - Orlandi, R. AU - Sukumar, S. AU - Sacchi, N. PY - 2000 DA - 2000// TI - Evidence of epigenetic changes affecting the chromatin state of the retinoic acid receptor beta2 promoter in breast cancer cells JO - Oncogene VL - 19 UR - https://doi.org/10.1038/sj.onc.1203456 DO - 10.1038/sj.onc.1203456 ID - Sirchia2000 ER - TY - JOUR AU - Virmani, A. K. AU - Rathi, A. AU - Zochbauer-Muller, S. AU - Sacchi, N. AU - Fukuyama, Y. AU - Bryant, D. AU - Maitra, A. AU - Heda, S. AU - Fong, K. M. AU - Thunnissen, F. PY - 2000 DA - 2000// TI - Promoter methylation and silencing of the retinoic acid receptor-beta gene in lung carcinomas JO - J Natl Cancer Inst VL - 92 UR - https://doi.org/10.1093/jnci/92.16.1303 DO - 10.1093/jnci/92.16.1303 ID - Virmani2000 ER - TY - JOUR AU - Bovenzi, V. AU - Momparler, R. L. PY - 2001 DA - 2001// TI - Antineoplastic action of 5-aza-2'-deoxycytidine and histone deacetylase inhibitor and their effect on the expression of retinoic acid receptor beta and estrogen receptor alpha genes in breast carcinoma cells JO - Cancer Chemother Pharmacol VL - 48 UR - https://doi.org/10.1007/s002800100294 DO - 10.1007/s002800100294 ID - Bovenzi2001 ER - TY - JOUR AU - Sirchia, S. M. AU - Ren, M. AU - Pili, R. AU - Sironi, E. AU - Somenzi, G. AU - Ghidoni, R. AU - Toma, S. AU - Nicolo, G. AU - Sacchi, N. PY - 2002 DA - 2002// TI - Endogenous reactivation of the RARbeta2 tumor suppressor gene epigenetically silenced in breast cancer JO - Cancer Res VL - 62 ID - Sirchia2002 ER - TY - JOUR AU - Cote, S. AU - Momparler, R. L. PY - 1997 DA - 1997// TI - Activation of the retinoic acid receptor beta gene by 5-aza-2'-deoxycytidine in human DLD-1 colon carcinoma cells JO - Anticancer Drugs VL - 8 UR - https://doi.org/10.1097/00001813-199701000-00007 DO - 10.1097/00001813-199701000-00007 ID - Cote1997 ER - TY - JOUR AU - Cote, S. AU - Sinnett, D. AU - Momparler, R. L. PY - 1998 DA - 1998// TI - Demethylation by 5-aza-2'-deoxycytidine of specific 5-methylcytosine sites in the promoter region of the retinoic acid receptor beta gene in human colon carcinoma cells JO - Anticancer Drugs VL - 9 UR - https://doi.org/10.1097/00001813-199810000-00001 DO - 10.1097/00001813-199810000-00001 ID - Cote1998 ER - TY - JOUR AU - Arapshian, A. AU - Kuppumbatti, Y. S. AU - Mira-y-Lopez, R. PY - 2000 DA - 2000// TI - Methylation of conserved CpG sites neighboring the beta retinoic acid response element may mediate retinoic acid receptor beta gene silencing in MCF-7 breast cancer cells JO - Oncogene VL - 19 UR - https://doi.org/10.1038/sj.onc.1203734 DO - 10.1038/sj.onc.1203734 ID - Arapshian2000 ER - TY - JOUR AU - Widschwendter, M. AU - Berger, J. AU - Hermann, M. AU - Muller, H. M. AU - Amberger, A. AU - Zeschnigk, M. AU - Widschwendter, A. AU - Abendstein, B. AU - Zeimet, A. G. AU - Daxenbichler, G. PY - 2000 DA - 2000// TI - Methylation and silencing of the retinoic acid receptor-beta2 gene in breast cancer JO - J Natl Cancer Inst VL - 92 UR - https://doi.org/10.1093/jnci/92.10.826 DO - 10.1093/jnci/92.10.826 ID - Widschwendter2000 ER - TY - JOUR AU - Pappas, J. J. AU - Toulouse, A. AU - Hebert, J. AU - Fetni, F. AU - Bradley, W. E. C. PY - 2008 DA - 2008// TI - Allelic methylation bias of the RARB2 tumor suppressor gene promoter in cancer JO - Genes Chromosomes Cancer VL - 47 UR - https://doi.org/10.1002/gcc.20603 DO - 10.1002/gcc.20603 ID - Pappas2008 ER - TY - JOUR AU - Sadri, R. AU - Hornsby, P. J. PY - 1996 DA - 1996// TI - Rapid analysis of DNA methylation using new restriction enzyme sites created by bisulfite modification JO - Nucleic Acids Res VL - 24 UR - https://doi.org/10.1093/nar/24.24.5058 DO - 10.1093/nar/24.24.5058 ID - Sadri1996 ER -