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Table 1 Comparison between constant and dynamic characteristics of amino acids

From: Predicting Crystallization Propensity of Proteins from Arabidopsis Thaliana

Amino acid

Number

CHAM830106a

CHAM830106 × number

Distribution probabilityb

Future composition (%)c

P0C0B0

Q8GW13

 

P0C0B0

Q8GW13

P0C0B0

Q8GW13

P0C0B0

Q8GW13

(Column 1)

(Column 2)

(Column 3)

(Column 4)

(Column 5)

(Column 6)

(Column 7)

(Column 8)

(Column 9)

(Column 10)

A

6

6

0

0

0

0.3472

0.2315

1.34

1.27

R

1

5

5

5

25

1.0000

0.2880

7.28

1.74

N

3

4

2

6

24

0.6667

0.5625

2.43

1.60

D

10

7

2

20

140

0.0127

0.2142

0.54

0.94

C

1

0

1

1

0

1.0000

0.0000

2.69

0.00

E

9

15

3

27

405

0.1967

0.0841

0.74

0.43

Q

2

6

3

6

36

0.5000

0.1543

2.24

0.99

G

7

4

0

0

0

0.2142

0.5625

0.99

1.56

H

4

5

3

12

60

0.1875

0.0640

0.76

0.92

I

9

2

2

18

36

0.1770

0.5000

0.86

2.70

L

6

16

2

12

192

0.3472

0.0568

1.79

0.64

K

17

14

4

68

952

0.0549

0.1178

0.29

0.40

M

3

2

3

9

18

0.6667

0.5000

0.90

1.02

F

10

2

4

40

80

0.1524

0.5000

0.37

1.79

P

4

3

0

0

0

0.5625

0.6667

1.17

2.02

S

8

13

1

8

104

0.2523

0.0515

0.99

0.62

T

8

6

1

8

48

0.2523

0.0386

1.03

1.18

W

1

0

5

5

0

1.0000

0.0000

0.60

0.00

Y

2

5

5

10

50

0.5000

0.2880

1.81

0.61

V

11

7

1

11

77

0.1077

0.1071

0.94

1.19

  1. [UniProtKB:P0C0B0] and [UniProtKB:Q8GW13] are two Arabidopsis thaliana proteins
  2. aCHAM830106 is an amino acid characteristic that describes the number of bonds in the longest chain of amino acids [26]
  3. bThe amino acid distribution probability is a dynamic characteristic computed according to the equation r!/(q 0! × q 1! × … × q n !) × r!/(r 1! × r 2! × … × r n !) × n –r, where ! is the factorial, r is the number of a type of amino acid, q is the number of partitions with the same number of amino acids, and n is the number of partitions in the protein for a type of amino acid
  4. cThe future composition of amino acids in a protein was computed using the translation probability based on the relationship between RNA codons and their translated amino acids [14]